Bioinformatics KMU Class

         for 醫學資訊系

                                                                           

Teacher: Dr. Hsueh-Wei Chang          

   

     

    Email: changhw@kmu.edu.tw

    Tel: 07-3121101ext2691

  • Laboratory web link (實驗室網站);                                            

  • Other class page link: genomics

students' homework

*3*  score done! no hw acceptable now. Thanks for your contribution.                                                                                 

 


update at 20070702  

1. class schedule

課程名稱 生物資訊
開課系級 醫療資訊管理學系   3年級
上課時間
No 星期 起節次 迄節次 教室
1 4 1 2 CS217
週次 月份   上課進度 講授者
01 03 [01]   生物資訊簡介(An Overview of Bioinformatics) [講義]  張學偉
02 03 [08]

  生物資訊基本技術-1.網頁製作(frontpage); 2.基因體學概論-How to sequence a genome, Assembly and   sequencing of human genomes

 張學偉
03 03 [15]   基礎分子生物(Basic molecular biology)  [講義]  邱建智
04 03 [22]   生物資料庫與軟體簡介 (Introduction of web servers and softwares for bioinformatics)  [講義]  張學偉
05 03 [29]   生物醫學文獻搜尋-NCBI   PubMed [講義]  張學偉
06 04 {05}   放假  
07 04 [12]   序列分析與比對(Sequence Analysis and Homology Search; BLAST–NCBI; UCSC-BLAT) [講義]  張學偉
08 04 [19]   生物工作平台(Biology WorkBench; Multiple sequence alignment)  張學偉
09 04 (26)   期中考不上課  
10 05 [03]   蛋白質體學技術簡介  邱建智
11 05 [10]   蛋白質資料庫 (Protein database-  Swissport; PDB; ExPASy); Motif[Prosite; Pfam; Interpro] [講義]  張學偉
12 05 [17]   蛋白質體軟體 (Software for Proteomics) (viewer_v502)  黃弘文
13 05 [24]   資料庫概念   楊正宏
14 05 (31)   轉錄體學(Transcriptomics; CGAP; SAGE [講義] )  張學偉
15 06 [07]   單核酸基因多型性(SNP - Single Nucleotide Polymophysim)  張學偉
16 06 [14]   個人化醫學(Personalized medicine)  張學偉
17 06 [21]   Final project- database/software presentation  張學偉
18 06 (28)   期末考不上課  

 

2. tryout software download & example [Non-commercial profits for bioinformatics class]

 photoshop 6.0 tryout  ws_ftp homepage  flash mx tryout ; flash sample file JavaWebStarter
 frontpage2000 tryout  dreamweaver tryout 解壓縮檔軟體: Win_RAR; WinZIP Software for Protein Structure Visualization

RasMolraswin

[NCBI]Cn3D-4.1

   swiss model

MDL Chime SP6

examples:

animation software (powerpoint; flash1; flash2; flash3)

prontpage insert flash--> to show flash in homepage[instruction;demo] (Many programs can insert and perform in this way.)  

KMU Web Server (www.kmu.edu.tw) 上 Counter CGI 的使用; 請注意: 使用時請將 try.dat 改成 "@.dat" [@可以是你自己寫的任何代號], 然後copy到 "記事本",再貼到frontpage的 HTML區即可.

on-line learning BLAST tutorial; BLAST Program Selection Guide; BLAST上課內容 Nucleotide-nucleotide BLAST (blastn); Protein-protein BLAST (blastp); Translated query vs. protein database (blastx); Protein query vs. translated database (tblastn); Translated query vs. translated database (tblastx). BLAST 2 SEQUENCES; materials for blast class: human P53 mRNA seq; Homo sapiens tumor protein p73 mRNA seq; secondary structure term: E= Extented; C = Coiled; H = Helix [terms for secondary structure of protein]

3D plugin instruction;

 

3. Useful links & tools.

 BioInformatics Glossary; Genome Glossary NCBI; -Omes and -omics glossary
 NCBI logo  

 Education bannerNCBI education guide;

 Basic html skill;

 Flash教學網站 1.完整Flash MX影片教學檔; 2.Flash MX 教學論壇; 3.Flash MX 動態網頁教學;  4. 基礎;進階;高階/港音發聲;

 NAR Database Issue Web Server Issue   NAR Database Issue    

 

4. Bioinformatics Journal list