Bioinformatics KMU Class

         for 醫學資訊系

students' homework

  score done! no hw acceptable now. Thanks for your contribution.                                                                                 

update at 20070702  

1. class schedule

週次	月份	四	上課進度	講授者
01	03	[01]	生物資訊簡介(An Overview of Bioinformatics) [講義]	張學偉
02	03	[08]	生物資訊基本技術-1.網頁製作(frontpage); 2.基因體學概論-How to sequence a genome, Assembly and   sequencing of human genomes	張學偉
03	03	[15]	基礎分子生物(Basic molecular biology)  [講義]	邱建智
04	03	[22]	生物資料庫與軟體簡介 (Introduction of web servers and softwares for bioinformatics)  [講義]	張學偉
05	03	[29]	生物醫學文獻搜尋-NCBI   PubMed [講義]	張學偉
06	04	{05}	放假
07	04	[12]	序列分析與比對(Sequence Analysis and Homology Search; BLAST–NCBI; UCSC-BLAT) [講義]	張學偉
08	04	[19]	生物工作平台(Biology WorkBench; Multiple sequence alignment)	張學偉
09	04	(26)	期中考不上課
10	05	[03]	蛋白質體學技術簡介	邱建智
11	05	[10]	蛋白質資料庫 (Protein database-  Swissport; PDB; ExPASy); Motif[Prosite; Pfam; Interpro] [講義]	張學偉
12	05	[17]	蛋白質體軟體 (Software for Proteomics) (viewer_v502)	黃弘文
13	05	[24]	資料庫概念	楊正宏
14	05	(31)	轉錄體學(Transcriptomics; CGAP; SAGE [講義] )	張學偉
15	06	[07]	單核酸基因多型性(SNP - Single Nucleotide Polymophysim)	張學偉
16	06	[14]	個人化醫學(Personalized medicine)	張學偉
17	06	[21]	Final project- database/software presentation	張學偉
18	06	(28)	期末考不上課

2. tryout software download & example [Non-commercial profits for bioinformatics class]

examples:

animation software (powerpoint; flash1; flash2; flash3)

prontpage insert flash--> to show flash in homepage[instruction;demo] (Many programs can insert and perform in this way.)  

KMU Web Server (www.kmu.edu.tw) 上 Counter CGI 的使用; 請注意: 使用時請將 try.dat 改成 "@.dat" [@可以是你自己寫的任何代號], 然後copy到 "記事本",再貼到frontpage的 HTML區即可.

on-line learning BLAST tutorial; BLAST Program Selection Guide; BLAST上課內容 Nucleotide-nucleotide BLAST (blastn); Protein-protein BLAST (blastp); Translated query vs. protein database (blastx); Protein query vs. translated database (tblastn); Translated query vs. translated database (tblastx). BLAST 2 SEQUENCES; materials for blast class: human P53 mRNA seq; Homo sapiens tumor protein p73 mRNA seq; secondary structure term: E= Extented; C = Coiled; H = Helix [terms for secondary structure of protein]

3D plugin instruction;

3. Useful links & tools.

 BioInformatics Glossary; Genome Glossary NCBI; -Omes and -omics glossary
   

 NCBI education guide;

 Basic html skill;

 Flash教學網站 1.完整Flash MX影片教學檔; 2.Flash MX 教學論壇; 3.Flash MX 動態網頁教學;  4. 基礎;進階;高階/港音發聲;

4. Bioinformatics Journal list