for Department of Biomedical Science and Environmental Biology
Email: changhw@kmu.edu.tw; Tel: 07-3121101ext2691
|
update at 20140922
1. class schedule
星期 | 起節次 | 迄節次 | 教室 |
1 | 3 | 4 | R3F電腦教室 |
月份 | 一 | 上課進度 | 講授者 | |
01 | 09 | [15] | An Overview of Bioinformatics | 張學偉 |
02 | 09 | [22] | Introduction to bioinformatics: Make your own homepage (wordpress) | 張學偉 |
03 | 09 | [29] | Introduction to Biological Database [NAR, Gene] TaxBrowser | 張學偉 |
04 | 10 | [06] | Computational vaccinology [POPI2.0; POPISK] | 童俊維 |
04 | 10 | [13] | Evolutionary Computation | 童俊維 |
06 | 10 | [20] | Protein database I- Swissport; PDB; ExPASy | 黃弘文 |
07 | 10 | [27] |
Protein database II (2D-Electrophoresis, proteomics analysis) [Viewer_v502.exe] |
黃弘文 |
08 | 10 | [03] | Protein-based Bioinformatics | 黃斌 |
09 | 11 | [10] | mid-term exam | |
10 | 11 | [17] | Sequence Analysis and Homology Search; NCBI-BLAST, UCSC Genome Browser (ePCR; BLAT) | 張學偉 |
11 | 11 | [24] | Biology WorkBench; Multiple sequence alignment | 張學偉 |
12 | 11 | [01] | SNP I- Single Nucleotide Polymophysim; SNP500Cancer; [講義] | 張學偉 |
13 | 12 | [08] | SNP II-SNP-RFLPing; HapMap [SNP-RFLPing paper; user-guide to Hapmap] ; [講義] | 張學偉 |
14 | 12 | [15] | Molecular docking | 林盈廷 |
15 | 12 | [22] | Evolutionary tree view for sequences - Mega | 趙怡珊 |
16 | 12 | [29] |
student presentation- database/software I |
張學偉 |
17 | 01 | [05] | student presentation- database/software II | 張學偉 |
18 | 06 | [13] | Final exam | 張學偉 |
Metabolomics I-KEGG pathway [講義]; Metabolomics II- Reactome; String (protein-protein interacting network),Pathway Interaction Database, CGAP-Pathway [講義1; 講義2]
Protein database III (2D-電泳, 蛋白質體分析) (viewer_v502, Mass, Peptide-Mass) Software for Protein Structure Visualization
2. Free software download
解壓縮檔軟體: Win_RAR; WinZIP | |||
raswin | Cn3D-4.1 [NCBI] | ||
MDL Chime SP6 | JavaWebStarter | Genamics Expression 1.1 DNA and protein sequence analysis. |
examples:
animation software (powerpoint; flash1; flash2; flash3)
prontpage insert flash--> to show flash in homepage[instruction;demo] (Many programs can insert and perform in this way.)
KMU Web Server (www.kmu.edu.tw) 上 Counter CGI 的使用; 請注意: 使用時請將 try.dat 改成 "something.dat", 然後copy到 "記事本",再貼到frontpage的 HTML區即可.
on-line learning BLAST tutorial; BLAST Program Selection Guide; BLAST上課內容 Nucleotide-nucleotide BLAST (blastn); Protein-protein BLAST (blastp); Translated query vs. protein database (blastx); Protein query vs. translated database (tblastn); Translated query vs. translated database (tblastx). BLAST 2 SEQUENCES; materials for blast class: human P53 mRNA seq; Homo sapiens tumor protein p73 mRNA seq; secondary structure term: E= Extented; C = Coiled; H = Helix [terms for secondary structure of protein]
3. Useful links & tools.
Homo sapiens genome data and search tips [NCBI]
Flash教學網站 1.完整Flash MX影片教學檔; 2.Flash MX 教學論壇; 3.Flash MX 動態網頁教學; 4. 基礎;進階;高階/港音發聲;
Update of Pedro's BioMolecular Research Tools (A Collection of WWW Links to Information and Services Useful to Molecular Biologists)
4. Bioinformatics Journal list